PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011746-PA
Common NameOsI_09790
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 306aa    MW: 33867.3 Da    PI: 6.0898
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011746-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072562892154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  BGIOSGA011746-PA 256 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 289
                       469*****************************87 PP
2ELK25.43.2e-09210231122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  BGIOSGA011746-PA 210 ELKIELKQGFKSRIEDVREEIL 231
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-164387IPR005540KNOX1
PfamPF037901.6E-144585IPR005540KNOX1
SMARTSM012568.8E-2598153IPR005541KNOX2
PfamPF037919.2E-19101152IPR005541KNOX2
PROSITE profilePS512139.132210230IPR005539ELK domain
PROSITE profilePS5007111.693230293IPR001356Homeobox domain
SMARTSM003894.9E-10232297IPR001356Homeobox domain
SuperFamilySSF466895.13E-16232296IPR009057Homeodomain-like
CDDcd000862.56E-11233294No hitNo description
Gene3DG3DSA:1.10.10.604.6E-25237296IPR009057Homeodomain-like
PfamPF059201.0E-17250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEMGVGSFTG GGGGGECSSS SATAAAAAAA AAAAAAAEAE ERQLLKGEIA VHPLCEQLVA  60
AHVGCLRVAT PIDHLPLIDA QLAQSSGLLH SYAAHHRPFL SPHDKQELDS FLAQYMMLLC  120
SFREQLQQHV RVHAVEAVMA CREIEQSLQD LTGATLEEGT GATMSEDEDE TAPMLEGPMD  180
MGSDGHDLMG FGPLMPTDSE RSLMERVRQE LKIELKQGFK SRIEDVREEI LRKRRAGKLP  240
GDTTTILKQW WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSQTSTL  300
KSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286305RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.41640.0flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO141491400.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLB8ALY80.0B8ALY8_ORYSI; Uncharacterized protein
STRINGONIVA03G01480.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-138KNOTTED-like homeobox of Arabidopsis thaliana 7