PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011927-PA
Common NameOsI_10142
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 132aa    MW: 14916 Da    PI: 6.5094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011927-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.9e-12411291095
                       HHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                B3  10 vlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                        ++++ +++  +f e++     g++   +  ++ +  + +s++++l+ r k++r +lt+GW++  +a+  +egD+++F++++  +   l+v+
  BGIOSGA011927-PA  41 LMTNAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVH 129
                       5677889999999999998764333..33344445567799999993.4444459************************9876566655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-940130IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-942127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1045131IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-846132No hitNo description
PROSITE profilePS508639.03778132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CCKFAAVKRT LMTNAKMTFA VQFSERYINK  60
YIGSPIDDLM VSMAGTTQSY QMRLKRSKDS RAMLTTGWNQ LIDAKAFDEG DVCLFHFKEV  120
DDVLVLKVHV LK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708451e-170AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB7EIH23e-63Y3643_ORYSJ; B3 domain-containing protein Os03g0164300
TrEMBLB8ANX35e-94B8ANX3_ORYSI; Uncharacterized protein
STRINGOGLUM01G49620.13e-79(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902055
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]