PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011986-PA
Common NameOsI_10266
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 512aa    MW: 57758.3 Da    PI: 8.3193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011986-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.34.3e-133066135
              GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k ++
  BGIOSGA011986-PA 30 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKGKV 66
                      5567766667************************986 PP
2FAR190.22.8e-28100185188
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fYn+YA +vGFsvrks+s ks +n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++ +k ++dgk+++++++ +HnH+
  BGIOSGA011986-PA 100 EFYNRYAGHVGFSVRKSSSDKSAENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMSIKITSDGKYRISEFVPDHNHQ 185
                       6*********************6665.99**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-92381No hitNo description
SMARTSM004014.8E-62478IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-112966IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.6E-113266IPR000679Zinc finger, GATA-type
PfamPF031015.0E-25100185IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.829359406IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4376403IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-4381408IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MQFEDGGDVH VGAGEGEDGG RVTVDELTRC LRCGISANAT PHMRRGPEGR RTLCNACGIA  60
WAKGKVRKVI DSDTPMDNAM FAQMVPELSM EFDDEDKAYE FYNRYAGHVG FSVRKSSSDK  120
SAENITRSRT FVCSREGFRK DKKGAKEVKR PRPETRIGCP ARMSIKITSD GKYRISEFVP  180
DHNHQPAPPS TMHMLRSQRV LTELQTTEAD SLEDSATPSR FSSCSLVKQA EVITHTNFLP  240
AEYRCSLCSK RKKNMQPDIK SSLQSESVRN ALKKSLSPQF DLLSFFKHYE RMLDEFRYAE  300
LQADFHASQS FPRIPPSKML RQAANMYTPV VFEIFRREFE MFVDSVIYSC GEDGNAFEYR  360
VAVTDRPGEH YVRFDSGDLS VVCSCKKFEA MGIQCCHVLK VLDFRNIKEL PQKYFMKRWK  420
KAVKSASTGN QELLNGGVSQ IPSSYLNVPV PFIDPQHVQS NNELNHDTSV SNSHQQALHG  480
GAQGSQGYAP LAGIQQQQFI GNFRLNHETG FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.332560.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329778250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678070.0AK067807.1 Oryza sativa Japonica Group cDNA clone:J013120L22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633159.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLB8APN80.0B8APN8_ORYSI; Uncharacterized protein
STRINGGSMUA_Achr2P15020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-27FAR1-related sequence 5