PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012207-PA
Common NameOsI_10700
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 719aa    MW: 78734.1 Da    PI: 6.705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012207-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081456347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +WT +E++ + +a +q G++ +++I  +++  ++  q++++++ +
  BGIOSGA012207-PA 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-91060IPR009057Homeodomain-like
PROSITE profilePS5129313.1551061IPR017884SANT domain
SMARTSM007175.2E-71159IPR001005SANT/Myb domain
PfamPF002493.5E-71456IPR001005SANT/Myb domain
CDDcd001671.06E-61457No hitNo description
Gene3DG3DSA:1.10.10.602.6E-51463IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MSLVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM  60
KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD  120
RNKTRKKCPR GDVCLSSSSS AVNRTPGNES FSVKLLAVDV SNGSKVGSSK GSFFKKVTEP  180
NCSNKSGATK GDLSATRTVK QKRRAGGVVA SAAYKKWERA AMAGVSLVAD AAEELERNTV  240
NADARMLSPS SSNACTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL  300
ELTLSARKKI SSVLEHLNRK WGNSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV  360
FRSVNSPSVF RLRYGWFSLA ELEAGVSEIS LTHFENCLIP EDIHAKSPSE ACVQKDGNSL  420
SSCAPEQHPC GSKDQSALLL AMPSSTGKSA QVPEQCIDVL PSQFGRQNQD QVTTNQVFEV  480
DQGMDCAAVS EGEWADTLTD ISVGYLLTEA SRGANTDCPG TSVVKNTLLL ENPCSYDSFD  540
AAVALHASRY KSAEQPALAS HSTIWGAEET CDAFSFNLPA SRKREGSNNS ASSSPDSDSD  600
VHPSNSEGFQ CFLQDLAGAA VAHNPCIDDA KDIESLCAES PPRSDHDSAP KDQSLADLYW  660
PDSLGPLDLD IPSATYHADD LLLGDSQNSW NRMMANSLDA FRNLSFFTAD KNDSIPSIM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.146930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329882380.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026880.0AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632626.10.0TSL-kinase interacting protein 1
RefseqXP_015632627.10.0TSL-kinase interacting protein 1
TrEMBLA0A0E0GJJ50.0A0A0E0GJJ5_ORYNI; Uncharacterized protein
TrEMBLA2XEE40.0A2XEE4_ORYSI; Uncharacterized protein
STRINGONIVA03G10690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-166TSL-kinase interacting protein 1