PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA012345-PA

Common Name

OsI_11017

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 379aa MW: 42481.7 Da PI: 9.1235

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012345-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22	3.5e-07	77	112	23	55
G2-like 23 GsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55 Gs + +P ++l + m+ gLtl+++ S LQkYRl BGIOSGA012345-PA 77 GSREVVPTKLLkrlKSMNETGLTLQNISSRLQKYRL 112 566667766651116799*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-7	90	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MPSCNNDHQI NPAAARTEEE HGHFSPSTML PAASLHGDSN GSTTTASSSS GNRATNRRNQ 60 CWEKLHKSNL LPRISRGSRE VVPTKLLKRL KSMNETGLTL QNISSRLQKY RLSLKRQTSH 120 VDQSTSTDST TASSIQTKQT PALLQQIIHP RALHTQLAPD VHQVITTNLP QQHIQHYQPN 180 QILSQLYNMH HQQVERLSEP HSNEPIYKEY NNLAQRFTQV NYHGHSSIHD HHYANIIKKL 240 LPPNVMQPCD LINALPQQPA AATACCMQSN TQTVSSALLV KGMQNHPPDH HIQAFGVLDM 300 GTAQYMGQQL NMYTAEGNWR GTTPQNMHPI SQVHRHVSEP PPSYFSNNAK ANGRSQEDLD 360 VVLQQKLVIN DSLVIIIPF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MPSCNNDHQI NPAAARTEEE HGHFSPSTML PAASLHGDSN GSTTTASSSS GNRATNRRNQ  60
CWEKLHKSNL LPRISRGSRE VVPTKLLKRL KSMNETGLTL QNISSRLQKY RLSLKRQTSH  120
VDQSTSTDST TASSIQTKQT PALLQQIIHP RALHTQLAPD VHQVITTNLP QQHIQHYQPN  180
QILSQLYNMH HQQVERLSEP HSNEPIYKEY NNLAQRFTQV NYHGHSSIHD HHYANIIKKL  240
LPPNVMQPCD LINALPQQPA AATACCMQSN TQTVSSALLV KGMQNHPPDH HIQAFGVLDM  300
GTAQYMGQQL NMYTAEGNWR GTTPQNMHPI SQVHRHVSEP PPSYFSNNAK ANGRSQEDLD  360
VVLQQKLVIN DSLVIIIPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP007204	0.0	AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8ALL3	0.0	B8ALL3_ORYSI; Uncharacterized protein
STRING	ONIVA01G15460.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19857	8	8