PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA012408-PA

Common Name

OsI_11133

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 238aa MW: 25426.1 Da PI: 10.1329

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012408-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.3	4.6e-09	20	102	2	84
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ e+ aLi+a ++ + +rg l +++W++ ++++ + r +r+ +C+ + + l+ ryk++ + s +++f++ BGIOSGA012408-PA 20 WSDGETAALIDAWDPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRARCRARVQTLKERYKRELAKPPP------SGWRHFSR 102 *************************************999888889*****************98665553......24555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-15	18	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSSSKPSPQQ QQQQRANEWW SDGETAALID AWDPLHVARS RGPLPAKDWR AAASAVNARR 60 AAAGRRHNRT RARCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLSG PPPGFPPKTM 120 PPASVKKEEE ECQDEAVGGG GGSGGLLGRW GCPDEAEERG RGVVPGGGGG DEAGRGVRAR 180 GVGEAGSGGE GGDGDGEGHA GSRQAEGGEA GHLNTYGMDV VARAMLSMIT ERRRRTQY

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115452430	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880270.1	1e-69	uncharacterized protein LOC4332524
TrEMBL	A2XFJ5	1e-168	A2XFJ5_ORYSI; Uncharacterized protein
STRING	OMERI02G32990.1	5e-87	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14753	12	13