PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA012409-PA

Common Name

OsI_11134

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 150aa MW: 16624.9 Da PI: 10.7839

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012409-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.3	4.1e-08	21	94	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70 W++ e+ aL++a ++ r g l+ ++W++ ++++ ++ r+ qCk++++ l+kr k+++ + + BGIOSGA012409-PA 21 WSDGETSALLDAWGPRNIRAAGGPLRTADWRACAAAVtarraVDGRAPRTVDQCKNRLDYLKKRLKAERSRLAG 94 ***********************************98887778889*****************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-13	20	100	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRNIRA AGGPLRTADW RACAAAVTAR 60 RAVDGRAPRT VDQCKNRLDY LKKRLKAERS RLAGTYERVE VAKQKEATRL EERRLEAMRD 120 LEIERMRILV DVAISASAVA DTATAASSSW

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115452432	1e-146

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137072	1e-144	AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence.
GenBank	AC213130	1e-144	AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
GenBank	AP014959	1e-144	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-144	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698074.1	1e-34	trihelix transcription factor ASIL1-like
Refseq	XP_025792102.1	2e-33	uncharacterized protein LOC112873338
TrEMBL	A2XFJ6	1e-99	A2XFJ6_ORYSI; Uncharacterized protein
STRING	GRMZM2G452695_P01	3e-32	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14022	13	13