PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA012540-PA

Common Name

OsI_11379

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 690aa MW: 77767.2 Da PI: 7.1832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012540-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.6	1.3e-15	65	165	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.........dgkwevtkl 81 Y+ +A++ GFs+r+++++ + + t+r fvC + g++ + + ++ +r+r ++r+gCka +++ ++ +g+w+vt + BGIOSGA012540-PA 65 LYSGFARRRGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGNPPAKPFAagaGDRPQRNRRSSRCGCKAYMRIGRSAiaaaaageaEGEWRVTGF 157 79**********9998877355667999******9999888777788899**********9875333333445689*** PP FAR1 82 eleHnHel 89 +++HnHel BGIOSGA012540-PA 158 SNHHNHEL 165 *****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-13	65	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-18	288	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.742	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-7	573	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-4	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MMPAGSASLL LECYGGDPPL SSMEGTSSGE EVEDGTGPSP EAEEDDDPAP YVGQRFPTHD 60 AAHELYSGFA RRRGFSIRRH RTEGKDGVGR GLTRRYFVCH RAGNPPAKPF AAGAGDRPQR 120 NRRSSRCGCK AYMRIGRSAI AAAAAGEAEG EWRVTGFSNH HNHELLGQDQ VRLLPAYRVV 180 SGDDRDRILM LARSGISVQQ MMRIMELERR VEPGNLPFTE KDVRNLIQSC RKSDQEESVD 240 LIKMCRRFQE KDPDFKYEFT KGASNRVENV AWSFASSVQS YEMFGDAVVF DTTHRLPALD 300 MLLGIWVGLN NHRMPCFFGC ALLREESLQS YAWALKVFLN FMNRKAPLTI LTDESMYLKE 360 AIEKELPGTK HALCIWLIAA RFPSWFDAVL GERYNSWRNE FDRLYNMEST MEFDLGWSDM 420 MNSYGLHGNG HIASLFASRT LWALPYLRGQ FFAGLLASPE TSKSISVFIQ RFSSAQTRLA 480 HFIEQVAVVA EYKDQVGEQQ MMQHNLQSIT LKTATPMERH AAAVLTPYAF SKLQDELVVA 540 SQYASFHLEG NVFLVRHHTK TDGGCNVTWS QRDELISCSC NMFESAGILC RHALRVLSTL 600 NYFQIPDHYL PPRWRRTWPS PSKALNGAYF DELPEIGRVK ELQSMVSALV SEASKSTERM 660 DIATQEVSAL LSRMRQQPAV VQVSGDGVHK

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MMPAGSASLL LECYGGDPPL SSMEGTSSGE EVEDGTGPSP EAEEDDDPAP YVGQRFPTHD  60
AAHELYSGFA RRRGFSIRRH RTEGKDGVGR GLTRRYFVCH RAGNPPAKPF AAGAGDRPQR  120
NRRSSRCGCK AYMRIGRSAI AAAAAGEAEG EWRVTGFSNH HNHELLGQDQ VRLLPAYRVV  180
SGDDRDRILM LARSGISVQQ MMRIMELERR VEPGNLPFTE KDVRNLIQSC RKSDQEESVD  240
LIKMCRRFQE KDPDFKYEFT KGASNRVENV AWSFASSVQS YEMFGDAVVF DTTHRLPALD  300
MLLGIWVGLN NHRMPCFFGC ALLREESLQS YAWALKVFLN FMNRKAPLTI LTDESMYLKE  360
AIEKELPGTK HALCIWLIAA RFPSWFDAVL GERYNSWRNE FDRLYNMEST MEFDLGWSDM  420
MNSYGLHGNG HIASLFASRT LWALPYLRGQ FFAGLLASPE TSKSISVFIQ RFSSAQTRLA  480
HFIEQVAVVA EYKDQVGEQQ MMQHNLQSIT LKTATPMERH AAAVLTPYAF SKLQDELVVA  540
SQYASFHLEG NVFLVRHHTK TDGGCNVTWS QRDELISCSC NMFESAGILC RHALRVLSTL  600
NYFQIPDHYL PPRWRRTWPS PSKALNGAYF DELPEIGRVK ELQSMVSALV SEASKSTERM  660
DIATQEVSAL LSRMRQQPAV VQVSGDGVHK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53871	0.0	callus\| flower\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32985742	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100533	0.0	AK100533.1 Oryza sativa Japonica Group cDNA clone:J023101L24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636061.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B8ANF9	0.0	B8ANF9_ORYSI; Uncharacterized protein
STRING	ORGLA04G0107700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]