PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012541-PA
Common NameOsI_11384
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 405aa    MW: 44655.4 Da    PI: 7.3135
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012541-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.41.8e-3498152155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+WtpeLHerFveav+qLGG+ekAtPkti++lm+v+gLtl+h+kSHLQkYRl
  BGIOSGA012541-PA  98 KPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 152
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.87495155IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-3396153IPR009057Homeodomain-like
SuperFamilySSF466897.88E-1897153IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2498153IPR006447Myb domain, plants
PfamPF002491.1E-10100151IPR001005SANT/Myb domain
PfamPF143794.7E-24200246IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEPAPLASLQ EEGEGEPGES PSSAAAAVPP RPATHSKKGI TNRMNSFFAL FMYHHQQQLQ  60
SHNQLLPSRQ SFPSERHLLM QGGSVSGESG LVLSTDAKPR LKWTPELHER FVEAVNQLGG  120
PEKATPKTIM RLMGVPGLTL YHLKSHLQKY RLSKNLHAQA NAGNVKNALV CTTATEKPSE  180
ANGSPVSHLN LGTQTNKSVH IGEALQMQIE VQRRVHEQLE VQRHLQLRIE AQGKYLQSVL  240
EKAQETLAKQ NAGSVGLETA KMELSELVSK VSTECLQHAF SGFEIESSQM LQGHTMHLGD  300
GSVDSCLTAC DGSQKDQDIL SISLSAQKGK EIGCMSFDMH VKERGSEDLF LDKLNRRPSN  360
HPERCERRGG FSMSCQTANL DLNMNDTYDG PKHCKKFDLN GFSWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2198154157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2198154157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2198154157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2198154157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2197154158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.515250.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329854910.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002820.0AK100282.1 Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627784.10.0myb-related protein 2 isoform X1
SwissprotQ9SQQ91e-101PHL9_ARATH; Myb-related protein 2
TrEMBLA2XG760.0A2XG76_ORYSI; Uncharacterized protein
STRINGONIVA03G16790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.44e-93myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]