PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012704-PA
Common NameOsI_11727
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 411aa    MW: 44816.6 Da    PI: 8.8617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012704-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-1249101348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                       +WT+eEd  l+++ ++ G ++W+++a+ m         +R++ qc++rw+++l
  BGIOSGA012704-PA  49 AWTPEEDACLARLAAENGFRHWRRVAESMAaarsgrrPRRSPGQCRDRWRDHL 101
                       7*************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.77742105IPR017930Myb domain
SMARTSM007172.9E-1046103IPR001005SANT/Myb domain
CDDcd001672.45E-649101No hitNo description
SuperFamilySSF466895.05E-1549124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1449118IPR009057Homeodomain-like
PfamPF139213.7E-1250117No hitNo description
PROSITE profilePS500905.935102156IPR017877Myb-like domain
SuperFamilySSF481132.06E-66163372IPR010255Haem peroxidase
PfamPF001411.9E-56166372IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE profilePS5087346.171167371IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.520.101.4E-53167329No hitNo description
CDDcd006937.99E-101167373No hitNo description
PROSITE patternPS004360180191IPR019794Peroxidase, active site
PRINTSPR004588.6E-18180194IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004614.9E-25182202IPR000823Plant peroxidase
PRINTSPR004614.9E-25223236IPR000823Plant peroxidase
PRINTSPR004614.9E-25242252IPR000823Plant peroxidase
PRINTSPR004588.6E-18243260IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004614.9E-25310322IPR000823Plant peroxidase
PROSITE patternPS004350311321IPR019793Peroxidases heam-ligand binding site
PRINTSPR004588.6E-18311326IPR002016Haem peroxidase, plant/fungal/bacterial
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0042744Biological Processhydrogen peroxide catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0098869Biological Processcellular oxidant detoxification
GO:0005576Cellular Componentextracellular region
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MELQGLEQEA AVQPPASAAF PSSAEEAAAA ASPTSGGKRI VLRIRLPPAW TPEEDACLAR  60
LAAENGFRHW RRVAESMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR  120
LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWDEVK KFVYKDAGVG  180
AGLIRLVFHD CFVEGCDGSV LLDPTPANPK PEKLSPPNFP SLRGFEVIDA AKDAVEKVCP  240
GVVSCADIVA FAARDAAYFL SRFRVKINVP GGRLDGRRSL DSDARNNLPP PNFNVNQLIG  300
AFAAKGLDAE DMVVLSGAHT VGRSHCSSFV SDRVAAPSDI NGGFANFLKQ RCPANPTSSN  360
DPTVNQDAVT PTRSTPVLQE RGGAQKSLCF SPASETKWLQ GRLDPGIALN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hdl_A1e-5617737230228Royal Palm Tree Peroxidase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.29650.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8343930.0CT834393.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115E15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632040.11e-143peroxidase 2
TrEMBLA2XH520.0A2XH52_ORYSI; Peroxidase
STRINGOS03T0368000-001e-143(Oryza sativa)
STRINGORGLA03G0175800.11e-143(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-07myb domain protein r1