PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA012861-PA

Common Name

HAP3a, OsI_12027

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YB

Protein Properties

Length: 219aa MW: 22987.4 Da PI: 7.0232

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA012861-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.1	5.3e-58	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plk yl+k+re+e BGIOSGA012861-PA 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIE 115 89******************************************************************************************* PP NF-YB 95 gek 97 ge+ BGIOSGA012861-PA 116 GER 118 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-54	20	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.8E-41	25	148	IPR009072	Histone-fold
Pfam	PF00808	7.0E-28	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.6E-20	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.6E-20	75	93	No hit	No description
PRINTS	PR00615	7.6E-20	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPDSDNDSGG PSNYAGGELS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY VDPLKHYLHK FREIEGERAA 120 ASTTGAGTSA ASTTPPQQQH TANAAGGYAG YAAPGAGPGG MMMMMGQPMY GSPPPPPQQQ 180 QQQHHHMAMG GRGGFGHHPG GGGGGSSSSS GHGRQDRGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-48	21	113	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.49770	0.0	leaf\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37542668	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY062181	0.0	AY062181.1 Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3a) mRNA, complete cds.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631006.1	1e-161	nuclear transcription factor Y subunit B-8
Swissprot	Q75IZ7	1e-162	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0E0FS37	1e-160	A0A0E0FS37_ORYNI; Uncharacterized protein
TrEMBL	Q6YNK1	1e-160	Q6YNK1_ORYSI; HAP3-like transcriptional-activator
STRING	ONIVA01G32600.1	1e-161	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-69	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]