PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013002-PA

Common Name

OsI_12339

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRAS

Protein Properties

Length: 127aa MW: 13960.3 Da PI: 5.0495

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013002-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	56.8	4.6e-18	28	124	1	94
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 lv+ L++cA+ vs+g++e+a +Larl e+as +g p++R+aayf e L ++r++++++++ pp+e +++ ++ ++al++++ ++Pi BGIOSGA013002-PA 28 LVRMLTACADSVSAGNHEAAIYYLARLCEMASLAGpMPIHRMAAYFIEVLTLCVVRMWPHMFNISPPRELANDAfsGDDDAMALRILNTITPI 120 6789*****************************99*****************************988798999************ PP GRAS 91 lkfs 94 l ++ BGIOSGA013002-PA 121 LLLG 124 9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.771	2	127	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-15	28	124	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MMPLPLSNFD ARNGVPTPGQ AEQETMELVR MLTACADSVS AGNHEAAIYY LARLCEMASL 60 AGPMPIHRMA AYFIEVLTLC VVRMWPHMFN ISPPRELAND AFSGDDDAMA LRILNTITPI 120 LLLGKHS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269\|PubMed:19220793}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269\|PubMed:19220793, ECO:0000269\|PubMed:22685166}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269\|PubMed:19220793}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881992.1	5e-47	protein DWARF AND LOW-TILLERING-like
Swissprot	Q9LWU9	4e-48	DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBL	B8AL46	5e-89	B8AL46_ORYSI; Uncharacterized protein
STRING	ORUFI03G24530.1	6e-86	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24047	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	6e-24	GRAS family protein

Publications ? help Back to Top
Tong H,Chu C Roles of DLT in fine modulation on brassinosteroid response in rice. Plant Signal Behav, 2009. 4(5): p. 438-9 [PMID:19816111] Li W, et al. Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice. Planta, 2010. 232(6): p. 1383-96 [PMID:20830595] Tong H, et al. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell, 2012. 24(6): p. 2562-77 [PMID:22685166] Zhang C,Bai MY,Chong K Brassinosteroid-mediated regulation of agronomic traits in rice. Plant Cell Rep., 2014. 33(5): p. 683-96 [PMID:24667992] Yang C,Shen W,He Y,Tian Z,Li J OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice. PLoS Genet., 2016. 12(6): p. e1006118 [PMID:27332964]