PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013008-PA
Common NameOsI_12355
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 408aa    MW: 42651.5 Da    PI: 6.0813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013008-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162568146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  BGIOSGA013008-PA 25 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 68
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.205119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-10631IPR009057Homeodomain-like
SuperFamilySSF466892.74E-19674IPR009057Homeodomain-like
PROSITE profilePS5129422.552074IPR017930Myb domain
SMARTSM007178.0E-152472IPR001005SANT/Myb domain
PfamPF002493.0E-152568IPR001005SANT/Myb domain
CDDcd001674.76E-112768No hitNo description
Gene3DG3DSA:1.10.10.601.4E-203269IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTGLLRCGKS CRLRWTNHLR PNLKKGSFSP DEELLIAQLH AQLGNKWARM ASHLPGRTDN  60
EIKNYWNTRT KRRQRAGLPV YPPDVQLHLA FAKRCRYDDF SSPLSSPQQS AGSNVLSMDA  120
ADAAGAASSG YTSARPPPLD LAGQLAMGSR PVQLLAATPF SAPSSPWGKP FARNAQFFQF  180
PHSSPVSPTT PTGPVQVHPV TPELSLGYGL HAGDRARLPP VSPSPGARAE LPSSQLRPSM  240
APTTAAAAAT GGLVGGALQD HPNAASLEAM LQELHDAIKI EPPAPPENRG TEEEGGGGGG  300
NLRGVSGDGK PEVELKDDIE TLFDLIIPAT FPPPAPEPAA AATPASAAPN HSSSVSQHSS  360
DDQDHSNGAD VVLDLPILTG GGGGSSEQDD WSLDGAACQW DNISGGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2167337104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-2267337104C-Myb DNA-Binding Domain
1msf_C9e-2267337104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLB8AL540.0B8AL54_ORYSI; Uncharacterized protein
STRINGOGLUM03G24880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-46myb domain protein 101