PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013137-PA

Common Name

OsI_12639

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 111aa MW: 12874.8 Da PI: 9.3234

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013137-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61	2e-19	32	111	4	90
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ s +++++ +++p+kf++++ggk s+t+ le+++g+++ vk+ +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f BGIOSGA013137-PA 32 QM--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIKNSRF 111 45..5556665.*********999..888************..******************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-19	23	111	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-19	25	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.182	26	111	IPR003340	B3 DNA binding domain
CDD	cd10017	4.90E-16	27	111	No hit	No description
SMART	SM01019	3.3E-5	29	111	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-17	33	111	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLDQ FGGKISRTVE 60 LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIKNSR F

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53859	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32985660	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100451	0.0	AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630232.2	1e-75	LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
Swissprot	Q851W4	2e-76	Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBL	B8AMK6	1e-78	B8AMK6_ORYSI; Uncharacterized protein
TrEMBL	C7J026	1e-78	C7J026_ORYSJ; Os03g0620500 protein
TrEMBL	I1PDJ5	2e-74	I1PDJ5_ORYGL; Uncharacterized protein
STRING	OS03T0620500-01	2e-79	(Oryza sativa)
STRING	ORGLA03G0244100.1	4e-75	(Oryza glaberrima)
STRING	OBART03G26260.1	9e-75	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-11	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]