PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013139-PA
Common NameOsI_12641
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 542aa    MW: 62039.3 Da    PI: 8.8834
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013139-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.8e-1933117598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  BGIOSGA013139-PA  33 M--SANFEHS-MIIPNKFLNQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLIL 116
                       4..5556655.***********999..888****************..*********************************99999..77777 PP

                       - CS
                B3  98 r 98 
                       +
  BGIOSGA013139-PA 117 D 117
                       6 PP
2B344.92.1e-14229327399
                       EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
                B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                       +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv  n++kegD+++F+l+  + ++f+
  BGIOSGA013139-PA 229 TTMKHSNVNSHhASLVIAKHYACAYF--PHTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVCHNHVKEGDICIFHLKnFNwRKFR 319
                       678888888886789*******8996..456779999985788*******77888888*************************9877789999 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                        +v+++r+
  BGIOSGA013139-PA 320 ATVHLLRE 327
                       99998875 PP
3B353.44.7e-17445537898
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS
                B3   8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 
                       s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n L++ D+++F+l+++  ++  ++v
  BGIOSGA013139-PA 445 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNLLQTEDICLFQLMKNseRGLAMKV 533
                       55555522345899******93.33344.5555554999*******..777776689***********************9977344555666 PP

                       EEE- CS
                B3  95 kvfr 98 
                       +++r
  BGIOSGA013139-PA 534 HIIR 537
                       6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2024121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2225125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71726119IPR003340B3 DNA binding domain
CDDcd100177.33E-1727117No hitNo description
SMARTSM010194.7E-929119IPR003340B3 DNA binding domain
PfamPF023626.7E-1733117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17219322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19222324IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-18225326No hitNo description
SMARTSM010190.004227321IPR003340B3 DNA binding domain
PfamPF023622.1E-13228327IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588228328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-21430539IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19431539IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-13436537No hitNo description
SMARTSM010192.5E-9438539IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506438539IPR003340B3 DNA binding domain
PfamPF023622.2E-15442538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLNQ FGGKISRTVE  60
LESPKGNVYV VKVSKHMNKT VLQCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG  120
CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTAQSSGG ERFARSESGE EAKESSSSEH  180
ESSYDLVDPQ IAPMPGYVLS RGTNLSQAHE EKLDMLVQEI RPEIPLYVTT MKHSNVNSHH  240
ASLVIAKHYA CAYFPHTSQT ITLKWHGKNR KWHPKFYIRK DQVGYILHGR WIDFVCHNHV  300
KEGDICIFHL KNFNWRKFRA TVHLLRETIP HSFGALHIPK RFESRNGRMR LKMTDDRRVS  360
STECRRGTME PSTTNVKKEA DNEQCNNGQG KRQEPLNFDV SVGSSKPYLT ADRVSLTEEQ  420
FMKVEENVHS IQSEGPIYVS IMNKSNVGTD GLYIITLGRQ FATRYLPEGE QTLTLLTTGT  480
GKAWQVKMRP RSGDARMFTL GWRDFVRDNL LQTEDICLFQ LMKNSERGLA MKVHIIRHNE  540
RS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538590.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856600.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLB8AMK80.0B8AMK8_ORYSI; Uncharacterized protein
STRINGONIVA03G27270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]