PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013148-PA
Common NameOsI_12663
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 212aa    MW: 22126 Da    PI: 9.7454
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013148-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.37.2e-23109153246
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                       pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  BGIOSGA013148-PA 109 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 153
                       9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-19106153IPR009057Homeodomain-like
SuperFamilySSF466894.48E-9106152IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-15109152IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATTAATAPD LSLHISPPSP PDMAAGGETM EQLAEPKLCL GFGTAAAAAA EQYNNGGCNL  60
QQQQRLHQPS QIQRFKKSAS GGSPVCSGGV AAARSGNGGG GGKRSSRAPR MRWTTALHAH  120
FVQAVELLGG HERATPKSVL ELMNVKDLTL AHMYRTVKGT TDRTCAEGHG QMRDMGFLRR  180
GGGGVDGFDV LGNTSSIAIA NIRAFNLKDA NI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.610241e-150stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629915.11e-108uncharacterized protein LOC9269134 isoform X2
TrEMBLB8AMM01e-155B8AMM0_ORYSI; Uncharacterized protein
STRINGOBART03G26440.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.28e-25G2-like family protein