PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013293-PA
Common NameOsI_12957
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 308aa    MW: 32596.1 Da    PI: 5.1883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013293-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.1e-15159204555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  BGIOSGA013293-PA 159 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 204
                       8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.355154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-19158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-17159208No hitNo description
PfamPF000104.1E-13159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDDSSLFLQW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DAEEVVVVPV QEEVITEAHG  60
GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQVQPNGGG  120
GGGAPEMAYG SPPAAGGSTT RKTSAPTVAA AAAYAQLEHV VAERKRREKI NQRFMELSAV  180
IPKLKKMDKA TILSDAASYI RELQEKLKAL EEQAAARVTE AAMATPSPAR AMNHLPVPPE  240
IEVRCSPTNN VVMVRIHCEN GEGVIVRILA EVEEIHLRII NANVMPFLDQ GATMIITIAA  300
KASSSLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13157213763Transcription factor MYC2
5gnj_B1e-13157213763Transcription factor MYC2
5gnj_E1e-13157213763Transcription factor MYC2
5gnj_F1e-13157213763Transcription factor MYC2
5gnj_G1e-13157213763Transcription factor MYC2
5gnj_I1e-13157213763Transcription factor MYC2
5gnj_M1e-13157213763Transcription factor MYC2
5gnj_N1e-13157213763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.11e-155LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA2XKH60.0A2XKH6_ORYSI; Uncharacterized protein
STRINGORUFI03G30180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-22bHLH family protein