PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013471-PA

Common Name

OsI_13320

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 245aa MW: 27567.6 Da PI: 8.3851

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013471-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ BGIOSGA013471-PA 4 RGHWRPSEDEKLKELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899***************************.*********996 PP
2	Myb_DNA-binding	54.1	3.6e-17	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ BGIOSGA013471-PA 56 RSPFTEEEEELLLASHRAHGNR-WAVIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.683	1	54	IPR017930	Myb domain
SMART	SM00717	1.9E-15	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.39E-29	4	97	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-18	4	49	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-27	5	57	IPR009057	Homeodomain-like
CDD	cd00167	3.79E-14	7	48	No hit	No description
SMART	SM00717	1.4E-15	55	103	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.144	55	105	IPR017930	Myb domain
Pfam	PF00249	2.3E-14	56	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-21	58	104	IPR009057	Homeodomain-like
CDD	cd00167	1.18E-5	71	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERMR LSNRRGGAAA 120 AGAAKGDESP ARISNGEKTA TRPPSTNGSG MAMASLLDKY RRECGAAGLF AIGRHHNNKE 180 NYCSSTNEDT SKSVEFYDFL QVNASSSDTK CGSSIEEQED NRDDDQAEGQ VQLIDFMEVG 240 TTSRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-34	1	105	1	105	C-Myb DNA-Binding Domain
1msf_C	3e-34	1	105	1	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.49785	0.0	flower\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37988223	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:19325888, ECO:0000269\|PubMed:21399993}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:23781226}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19674407, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:22197883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111560	0.0	AK111560.1 Oryza sativa Japonica Group cDNA clone:J013060F16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628938.1	0.0	transcription factor MYB52
Swissprot	Q6R0C4	2e-75	MYB52_ARATH; Transcription factor MYB52
TrEMBL	A2XLH1	0.0	A2XLH1_ORYSI; Uncharacterized protein
STRING	ORUFI03G33630.1	0.0	(Oryza rufipogon)
STRING	OS03T0720800-01	0.0	(Oryza sativa)
STRING	ORGLA03G0409400.1	0.0	(Oryza glaberrima)
STRING	OBART03G32240.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-75	myb domain protein 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Shi D, et al. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Plant Physiol., 2018. 176(4): p. 2737-2749 [PMID:29440562]