PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013535-PA
Common NameOsI_13453
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 384aa    MW: 41658.5 Da    PI: 10.5126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013535-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.7e-31318376259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  BGIOSGA013535-PA 318 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 376
                       69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-16271315IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34305377IPR003657WRKY domain
PROSITE profilePS5081129.757312378IPR003657WRKY domain
SuperFamilySSF1182908.37E-27315376IPR003657WRKY domain
SMARTSM007742.5E-38317377IPR003657WRKY domain
PfamPF031068.4E-27319375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEANREAVQ SCHRVLTLLS SPHSQLVPNK DLAAATGEAV AKLCSVASRL NNGNGLQGHA  60
RVRKIKKPLP IFDSNLFLES PALAVATAAK TPNSSPITSL QLFPRYHQME GSSSKDPVRI  120
PAQFPKRLLL DNPAVDSDGP SQGPPLQLIQ PVSVAPPAGT PHLALPSAHL HFIQQHQSYQ  180
RFQLMQQMKM QSEMIKRSGL GEQGGSNGGG KGVNLKFDSS NCTASSSRSF LSSLSMEGSI  240
ASLDGSRSSR PFQLVSGSQT SSTPELGLMQ RRRCTGREDG SGRCTTGSRC HCAKKRKLRI  300
RRSIKVPAIS NKVADIPADE FSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD  360
DPSMLIVTYE GDHNHNRVLA AQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193153761272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.591300.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914610.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLB8AJT70.0B8AJT7_ORYSI; Uncharacterized protein
STRINGONIVA10G03010.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-60WRKY DNA-binding protein 21