PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA013634-PA

Common Name

OsI_13678

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 378aa MW: 41183.1 Da PI: 10.415

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA013634-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.3	5.4e-08	145	194	5	49
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFq 49 +t+ q+e+Le++++++++p ++r++L +l +++ +q +kvWF BGIOSGA013634-PA 145 VHYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFP 194 679****************************99999987765***5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-8	123	193	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-6	126	195	IPR009057	Homeodomain-like
SMART	SM00389	0.0075	140	207	IPR001356	Homeobox domain
CDD	cd00086	2.55E-5	143	193	No hit	No description
Pfam	PF00046	1.3E-5	145	194	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MPFPHGGVGP AACAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSTWN TMTVAAEVDA 60 SPDGEERRKQ ACNRTTIYRF LPSFSFFFLS FVSSSHMSGG EGGNFGGGGG RSGGWRQRWR 120 CPMRSGSGSD GGGYDKAGMD SGKYVHYTPG QVEALERVYA ECPKPRFSRR QQLLCELSIL 180 ANIEPKQKIK VWFPKQKLFQ GLTNASHDAK VKELLVSVCN GAVETMVKTT HHVMSNANYK 240 SVSSGSNGAG EGWVETVSST LAVPSNRKFV LDVTGRVTFE TVRSFLEFAL WKMHAGAKKG 300 GNTVMDSGLR AMQYMTDKSM VIATICITLC LHVLNGTRLL LGDTGKANKA NGPFSPWPRL 360 QSSTLQGSRP SVLRYFQA

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MPFPHGGVGP AACAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSTWN TMTVAAEVDA  60
SPDGEERRKQ ACNRTTIYRF LPSFSFFFLS FVSSSHMSGG EGGNFGGGGG RSGGWRQRWR  120
CPMRSGSGSD GGGYDKAGMD SGKYVHYTPG QVEALERVYA ECPKPRFSRR QQLLCELSIL  180
ANIEPKQKIK VWFPKQKLFQ GLTNASHDAK VKELLVSVCN GAVETMVKTT HHVMSNANYK  240
SVSSGSNGAG EGWVETVSST LAVPSNRKFV LDVTGRVTFE TVRSFLEFAL WKMHAGAKKG  300
GNTVMDSGLR AMQYMTDKSM VIATICITLC LHVLNGTRLL LGDTGKANKA NGPFSPWPRL  360
QSSTLQGSRP SVLRYFQA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.6755	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241832	0.0	AK241832.1 Oryza sativa Japonica Group cDNA, clone: J065213C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633127.1	1e-104	homeobox-leucine zipper protein ROC4-like
TrEMBL	B8AKJ2	0.0	B8AKJ2_ORYSI; Uncharacterized protein
STRING	OS03T0769800-01	1e-104	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20296	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	1e-20	HD-ZIP family protein