PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013637-PA
Common NameOsI_13685
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 559aa    MW: 61140.3 Da    PI: 6.3493
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013637-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084705052055
                       HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  BGIOSGA013637-PA 470 YKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 505
                       5679*****************************885 PP
2ELK40.46e-14425446122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       +LKhqLlrKY+g+Lg+L+qEFs
  BGIOSGA013637-PA 425 QLKHQLLRKYGGSLGDLRQEFS 446
                       59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-19287331IPR005540KNOX1
PfamPF037908.8E-19288327IPR005540KNOX1
SMARTSM012567.2E-26342394IPR005541KNOX2
PfamPF037912.1E-19352392IPR005541KNOX2
PfamPF037891.4E-10425446IPR005539ELK domain
SMARTSM011882.1E-7425446IPR005539ELK domain
PROSITE profilePS5121310.894425445IPR005539ELK domain
PROSITE profilePS5007112.503445508IPR001356Homeobox domain
SuperFamilySSF466894.71E-18447512IPR009057Homeodomain-like
SMARTSM003891.2E-11447512IPR001356Homeobox domain
CDDcd000868.72E-14448508No hitNo description
Gene3DG3DSA:1.10.10.601.9E-26450508IPR009057Homeodomain-like
PfamPF059201.3E-16465504IPR008422Homeobox KN domain
PROSITE patternPS000270483506IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MPGGASRQDN EYVHGESTTR RHDDSFMVAV IACSSLPSVT APMRTLDDDV GMWTVEDAAS  60
ATSSGIRHGW WRMRPPAMSP AWGVAEEDAA TGDELRRGTW MAEDVAAPAT ISGVDRGGCR  120
CRRQALARDV DGGITGDDLW RGSWRMPPPA TSSGTRRGRW DHRRRSPAWI VEDAAAGDKL  180
RHKTWTGLFA ITTIYRLFFT SPVLSAMESF ASLAGGGSSS TTARLPELIS PENPDHISPP  240
PLLYQLLAGP ESSARQHGHD GHHHGGGGGE AAAAAVQGQV SPAGAEAAVK AEIMSHPQYS  300
ALLAAYLGCK KVGAPPDVLT KLTAVPAAQQ LDEADGHPRR LHEPQRDDDP DQLDQFMDAY  360
CSMLTRYREE LERPIQEAAE FFSRVETQLD SLAESNCEGT GSSEEEQDQD TSCPEAEEID  420
PSDKQLKHQL LRKYGGSLGD LRQEFSKRTK KGKLPKEARQ KLLHWWELHY KWPYPSEMEK  480
MTLAQTTGLD QKQINNWFIN QRKRHWKPTP VAGTAFPTME AAGGGFRHSG HGGGLAAAAA  540
LPLYMGRPFV VDGMYRLGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575510.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO51037260.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in globular stage embryo 3 days after pollination (DAP) in a small region just below the center of the ventral portion of the embryo. At coleoptile stages, mainly expressed in the basal and central parts of the ventral side of the embryo, in cells just below the coleoptile, and corresponding to the epiblast and part of the shoot region. At the shoot apex differentiation stage, expressed in the shoot apical meristem (SAM) and the epiblast, but not in the region between the SAM and epiblast. Expressed also in the cells surrounding the ventral side of the root apical meristem. Expression pattern is maintained in subsequent stages after the second leaf primordium is formed. During inflorescence development, expressed only in the corpus of the rachis primordium, but not in the tunica layer (L1). After floral induction, expressed in both tunica and corpus, but not in floral organ primordia. Later in flower development, expression in the corpus of the floral meristem disappears. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.10.0homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLB8AKJ50.0B8AKJ5_ORYSI; Uncharacterized protein
STRINGONIVA03G37180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-70KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]