PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013638-PA
Common NameOsI_13687
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 357aa    MW: 38788.7 Da    PI: 6.3448
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013638-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.9e-102622991855
                       HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       ++ k +yps+ e+  LA+ +gL+++q+++WF N+R ++
  BGIOSGA013638-PA 262 HYDKWPYPSEMEKMTLAQTTGLDQKQISNWFINQRKRH 299
                       68889******************************885 PP
2ELK34.35e-12218239122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       +LKhqLl KY+g+Lg+L+qEFs
  BGIOSGA013638-PA 218 QLKHQLLMKYGGSLGDLRQEFS 239
                       59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.0E-1979123IPR005540KNOX1
PfamPF037901.0E-1880119IPR005540KNOX1
SMARTSM012564.7E-24138189IPR005541KNOX2
PfamPF037911.3E-18144187IPR005541KNOX2
PROSITE profilePS5121310.319218238IPR005539ELK domain
SMARTSM011881.2E-6218239IPR005539ELK domain
PfamPF037892.6E-10218239IPR005539ELK domain
PROSITE profilePS5007112.066238302IPR001356Homeobox domain
SuperFamilySSF466898.13E-16240308IPR009057Homeodomain-like
SMARTSM003891.7E-11240306IPR001356Homeobox domain
CDDcd000861.87E-13241302No hitNo description
Gene3DG3DSA:1.10.10.604.8E-24243302IPR009057Homeodomain-like
PfamPF059202.0E-15258298IPR008422Homeobox KN domain
PROSITE patternPS000270277300IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG  60
GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ CSALLAAYLG CKKVGAPPDV LTKLTAVPAA  120
QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMDAYCSMLT RYREELERPI LEAAEFFSMV  180
ETQLDSIAES NCEGTGSSEE EQDTSCPEAE EIDPSDKQLK HQLLMKYGGS LGDLRQEFSK  240
RTKKGKLPKE ARLKLLHWWE LHYDKWPYPS EMEKMTLAQT TGLDQKQISN WFINQRKRHW  300
KPTPVAGMTF PTVEAAGGGF RHSGHDGGLA AAAAAAALPL YMGSWPFVVD GMYRLGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.607410.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977225840.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.10.0homeobox protein knotted-1-like 9
SwissprotQ10EC60.0KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLB8AKJ60.0B8AKJ6_ORYSI; Uncharacterized protein
STRINGOGLUM03G35430.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-70KNOTTED-like from Arabidopsis thaliana