PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013705-PA
Common NameOsI_13842
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 171aa    MW: 18322.4 Da    PI: 7.7749
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013705-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.77e-37211211101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n  ++l++lp +er +a++s++ eA  r++dPvyG++gvi++lq q++ ++ e
  BGIOSGA013705-PA  21 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQQLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDQIRAAQCE 113
                       6******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la +++++
  BGIOSGA013705-PA 114 LAWTHAQI 121
                       ***99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.76320121IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3521117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSPGEEDVEA SSDSGGSATR RCAACKFLRR RCSRDCVLAP HFPASDPHRY ACVQRVFGAG  60
NTARMLQQLP VQERGRAADS MAAEAYRRVQ DPVYGCAGVI NRLQDQIRAA QCELAWTHAQ  120
IAMHSAAAAH ARTTLPPGQR DGGGGGAPST QQATTSAAWQ LEDFASEFSF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-312212512115LOB family transfactor Ramosa2.1
5ly0_B8e-312212512115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0870961e-178AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBankAP0149591e-178AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-178CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690105.12e-67PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-41LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA2XMS11e-121A2XMS1_ORYSI; Uncharacterized protein
TrEMBLQ852M31e-121Q852M3_ORYSJ; LOB domain protein 4, putative
STRINGOPUNC03G33890.11e-101(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.16e-41LOB domain-containing protein 24