PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013724-PA
Common NameOsI_13888
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 208aa    MW: 23356.2 Da    PI: 9.2385
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013724-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36391302102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  BGIOSGA013724-PA  39 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLL 122
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+k 
  BGIOSGA013724-PA 123 KSIKRRKP 130
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3935128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6235128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-3635128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-213962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-217789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-2190102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNYRVVNPVK VESGPSTGVA NGQPPRPMDG LADGGPPPFL TKTYDMVDDP TTDAVVSWSA  60
TNNSFVVWDP HLFGNVLLPR YFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH  120
LLKSIKRRKP PNSSPSQQSL GSFLEVGHFG YEGEIDQLKR DKHLLMAEVV KLRQEQQTQV  180
RPASYGTELQ GTEHKQPAHD GILGTSYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-28171285129Heat shock factor protein 1
5d5v_B2e-28171285129Heat shock factor protein 1
5d5v_D2e-28171285129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127LKSIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53641e-164callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166390021e-164
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686600.0AK068660.1 Oryza sativa Japonica Group cDNA clone:J013162K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630486.11e-132heat stress transcription factor A-2e
SwissprotQ6F3881e-133HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLB8ALA51e-153B8ALA5_ORYSI; Uncharacterized protein
STRINGOGLUM03G37030.11e-132(Oryza glumipatula)
STRINGORUFI03G38880.11e-132(Oryza rufipogon)
STRINGOS03T0795900-011e-132(Oryza sativa)
STRINGONIVA03G38630.11e-132(Oryza nivara)
STRINGOBART03G37290.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-75heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]