PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014220-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 184aa    MW: 19678.8 Da    PI: 10.801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014220-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-1753102255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  BGIOSGA014220-PA  53 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 102
                       69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3052111IPR001471AP2/ERF domain
PROSITE profilePS5103222.58953110IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2153111IPR016177DNA-binding domain
SMARTSM003806.7E-3753116IPR001471AP2/ERF domain
PfamPF008471.7E-1053102IPR001471AP2/ERF domain
PRINTSPR003674.2E-125465IPR001471AP2/ERF domain
CDDcd000181.63E-2554111No hitNo description
PRINTSPR003674.2E-1292112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQGEYHRSSS EDSAASAAAA AAAAAAAMAP LAAAAAAAAA AVLPLQQQQP RRQYRGVRMR  60
KWGKWVAEIR EPHKRTRIWL GSYATPVAAA RAYDTAVFYL RGRSARLNFP EEISSLASLS  120
EGGGASEPRE PDGGTLSAAS IRKKAIEVGS RVDAXXXXXX XXXXXXXXXX XXVAMPWGFL  180
SLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1552115468ATERF1
3gcc_A1e-1552115468ATERF1
5wx9_A3e-15531141476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.226290.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172349600.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610950.0AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence.
GenBankAK0993330.0AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence.
GenBankAL6066350.0AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL7323350.0AL732335.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637236.14e-70ethylene-responsive transcription factor ERF008
SwissprotO221745e-42ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0D9ZRM38e-69A0A0D9ZRM3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H6N88e-69A0A0E0H6N8_ORYNI; Uncharacterized protein
TrEMBLA2XYA38e-69A2XYA3_ORYSI; Uncharacterized protein
TrEMBLQ25A308e-69Q25A30_ORYSA; H0721B11.1 protein
TrEMBLQ7XTV68e-69Q7XTV6_ORYSJ; OSJNBa0010D21.10 protein
STRINGOGLUM04G27370.11e-69(Oryza glumipatula)
STRINGOS04T0648900-011e-69(Oryza sativa)
STRINGONIVA04G25910.11e-69(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.19e-40DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]