PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA014307-PA

Common Name

OsI_17516

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 162aa MW: 19078.2 Da PI: 7.3957

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014307-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	2.1e-21	102	157	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k BGIOSGA014307-PA 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 157 678899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-23	81	157	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-20	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	99	159	IPR001356	Homeobox domain
SMART	SM00389	1.9E-15	100	162	IPR001356	Homeobox domain
CDD	cd00086	2.90E-17	102	160	No hit	No description
Pfam	PF00046	4.9E-19	102	157	IPR001356	Homeobox domain
PRINTS	PR00031	2.8E-5	130	139	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	134	157	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	139	155	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MERREIFQVA DLAHILRGKP VDHLQQPNLL DNHQFQQAFQ HQQQQHHLLD QIPATTAESG 60 DNMIRSRASD PLGGDEFESK SGSENVDGVS VDDQDPNQRP RKKRYHRHTQ HQIQEMEAFF 120 KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKVKK PN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.12432	0.0	callus\| flower\| leaf\| panicle\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	31339096	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB101645	0.0	AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636340.1	1e-109	homeobox-leucine zipper protein ROC2 isoform X2
Swissprot	Q0J9X2	2e-91	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A2XXU1	1e-116	A2XXU1_ORYSI; Uncharacterized protein
STRING	ORUFI04G27800.1	1e-108	(Oryza rufipogon)
STRING	OBART04G26630.1	1e-110	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP26659	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	2e-40	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]