PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014342-PA
Common NameOsI_17416
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 199aa    MW: 22275.2 Da    PI: 10.1861
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014342-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-5051681128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.........................kvkaeekewyfFskrdkk 67 
                       lppGfrFhP+deelvv+yL +k++g       v + +vd++k+ePw+Lp+                         +++ + +ewyfFs +d+k
  BGIOSGA014342-PA   5 LPPGFRFHPRDEELVVDYLYHKLSGGGEFYGGVaMVDVDLNKCEPWELPAyflhnliifparararaagrrrredAARVGATEWYFFSLHDRK 97 
                       79**********************9995554555***************6699**********9999998877664455888*********** PP

               NAM  68 yatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       yatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  BGIOSGA014342-PA  98 YATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 168
                       ***************************977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-463175IPR003441NAC domain
PROSITE profilePS5100547.2885194IPR003441NAC domain
PfamPF023651.5E-266168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEANLPPGFR FHPRDEELVV DYLYHKLSGG GEFYGGVAMV DVDLNKCEPW ELPAYFLHNL  60
IIFPARARAR AAGRRRREDA ARVGATEWYF FSLHDRKYAT GQRTNRATRS GYWKATGKDR  120
AIVTRRRAAA GEAVAGGEVV GMRKTLVFYQ GRAPRGSKTE WVMHEFRVDG HAVADHPSSS  180
TSSSSSNLLK VLHASICFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-38216812140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801600.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629700.0AL662970.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.12e-92NAC domain-containing protein 21/22
TrEMBLB8AU781e-145B8AU78_ORYSI; Uncharacterized protein
STRINGORUFI04G27160.21e-135(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-50NAC family protein