PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA014351-PA

Common Name

OsI_17404

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 961aa MW: 108629 Da PI: 8.5747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014351-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.6e-24	200	283	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA ++GFsvrk k+ +n +r fvCs+eg+r++++ k r+r+etrtgC a++ +k+ ++gk++v++++++HnH+la BGIOSGA014351-PA 200 EYYASYAGNIGFSVRKGLWDKTVKN-VARSRVFVCSREGFRSKNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLA 283 69**************9999555.599*********98777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-21	200	283	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-28	380	474	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.064	647	694	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-4	669	696	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MATASTSGDP TAAAGEPTPS SSASAQPRQP ASRISHIVRT YLDLSSNPKK RRAAPTSHPK 60 PAAAAAGQGA PDAGDGKDSG GKAAVTPSSA AQPTTTRLLR ELGVRVSRYT HEERRDIVLR 120 YMQKRSGRQG VKRATAKAPS RQALAERRRR GARGQFLGKE GAKTVDKPEE DPEVPPEVIA 180 NAGGVPMVGM VFENEEKAYE YYASYAGNIG FSVRKGLWDK TVKNVARSRV FVCSREGFRS 240 KNEAKRPRPE TRTGCPARIA IKLVSNGKYR VAEFVEDHNH QLAAPFDIDM LKSERVLTKV 300 QPGNRNASNI PPGCKNYIRA KSSTHMNSED LGALMDYFRR MKSDNPSFYY AIQVDENDKA 360 TNVFWADARS IVDYHYFCDV ICFDTTYRSN DCRKPLALFL GMNHHRQTII FGSAFLYDET 420 VESFKWLLET FKSAMCGKQP KTILTDRSAA LKEALSLTWP GTIHRSCVWQ IYQNAFKSLE 480 HVFNTLEEFT HDFHHCMFDI EDDQEFDEIW NVIIKKYSLK GEEWLTKLYE DRENWALPYN 540 RQIFFGDIKG MLQVETSCVG LREFLDCEKD LSKFFMFFES SMEKRRQEEI QADYQASEGA 600 PRISLPLLWQ AAKVYTPIIF ELFRKEYELC MDCMAYSCGE FGSLSEYMIT VKNKTKDQLV 660 RFDSSDGTVA CTCKKFENAG ILCCHILKVY ELRNVKEIRP QYFLKRWRKD AKVGSTDETN 720 RFNFDSGTKS SVPERYAALC RSFYKIAAKA AENAETFALM ASQSDRLVEE VERILQSTLA 780 NKSSVGPSIK NQLTSMVQNE YLLNSSNEVE KSTGKKKTEV YRHKSAVVTN KMQKTRKDTR 840 HPDEAATGTR DGELNMTPDN RQSEARNSPN QFLPDQLMQG HYILGQNYGL GTSENLHNNL 900 NQFGQASSLP TMQQQAFPGN NQLTQGYPSD MHALQFVGAN PQMEHQNGDQ GQSSIPVWDF 960 L

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MATASTSGDP TAAAGEPTPS SSASAQPRQP ASRISHIVRT YLDLSSNPKK RRAAPTSHPK  60
PAAAAAGQGA PDAGDGKDSG GKAAVTPSSA AQPTTTRLLR ELGVRVSRYT HEERRDIVLR  120
YMQKRSGRQG VKRATAKAPS RQALAERRRR GARGQFLGKE GAKTVDKPEE DPEVPPEVIA  180
NAGGVPMVGM VFENEEKAYE YYASYAGNIG FSVRKGLWDK TVKNVARSRV FVCSREGFRS  240
KNEAKRPRPE TRTGCPARIA IKLVSNGKYR VAEFVEDHNH QLAAPFDIDM LKSERVLTKV  300
QPGNRNASNI PPGCKNYIRA KSSTHMNSED LGALMDYFRR MKSDNPSFYY AIQVDENDKA  360
TNVFWADARS IVDYHYFCDV ICFDTTYRSN DCRKPLALFL GMNHHRQTII FGSAFLYDET  420
VESFKWLLET FKSAMCGKQP KTILTDRSAA LKEALSLTWP GTIHRSCVWQ IYQNAFKSLE  480
HVFNTLEEFT HDFHHCMFDI EDDQEFDEIW NVIIKKYSLK GEEWLTKLYE DRENWALPYN  540
RQIFFGDIKG MLQVETSCVG LREFLDCEKD LSKFFMFFES SMEKRRQEEI QADYQASEGA  600
PRISLPLLWQ AAKVYTPIIF ELFRKEYELC MDCMAYSCGE FGSLSEYMIT VKNKTKDQLV  660
RFDSSDGTVA CTCKKFENAG ILCCHILKVY ELRNVKEIRP QYFLKRWRKD AKVGSTDETN  720
RFNFDSGTKS SVPERYAALC RSFYKIAAKA AENAETFALM ASQSDRLVEE VERILQSTLA  780
NKSSVGPSIK NQLTSMVQNE YLLNSSNEVE KSTGKKKTEV YRHKSAVVTN KMQKTRKDTR  840
HPDEAATGTR DGELNMTPDN RQSEARNSPN QFLPDQLMQG HYILGQNYGL GTSENLHNNL  900
NQFGQASSLP TMQQQAFPGN NQLTQGYPSD MHALQFVGAN PQMEHQNGDQ GQSSIPVWDF  960
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	248	KRPRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53329	0.0	callus\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32982050	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636013.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A2XXJ7	0.0	A2XXJ7_ORYSI; Uncharacterized protein
STRING	ORGLA04G0223700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5