PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014527-PA
Common NameOsI_17027
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 849aa    MW: 90767.6 Da    PI: 5.3594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014527-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.81.6e-22121176156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
  BGIOSGA014527-PA 121 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 176
                       688999***********************************************998 PP
2START144.88.3e-463325922206
                       HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S... CS
             START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla... 77 
                       la +a++elvk+a+ ++p+W   +        es+n +e+l +f++  +     + +ea+r+sg+v+ +  a lve+l+d + +W+ ++    
  BGIOSGA014527-PA 332 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDER-RWSDMFScmi 423
                       67899***************9766667999****************9999**************998651558*********.********** PP

                       .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEE CS
             START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepk 157
                        ka+t+e is+g      gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+    +      s   + +++lpSg++++++
  BGIOSGA014527-PA 424 aKASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVLQDT 516
                       *************************************************************9987666666454555689************* PP

                       CTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 158 sngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +ng                              vtwveh++++++++h l+r+l++sgla ga +w atlqrqce+
  BGIOSGA014527-PA 517 PNGFvkylvqisvfsevynlsidqfldlppaFMVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 592
                       ******************************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-22105176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-24107178IPR009057Homeodomain-like
PROSITE profilePS5007118.366118178IPR001356Homeobox domain
SMARTSM003893.2E-20119182IPR001356Homeobox domain
CDDcd000861.22E-20120176No hitNo description
PfamPF000467.9E-20121176IPR001356Homeobox domain
PRINTSPR000319.4E-5149158IPR000047Helix-turn-helix motif
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PRINTSPR000319.4E-5158174IPR000047Helix-turn-helix motif
PROSITE profilePS5084840.089322595IPR002913START domain
SuperFamilySSF559616.78E-21325519No hitNo description
CDDcd088756.19E-100326591No hitNo description
SMARTSM002345.1E-31331592IPR002913START domain
PfamPF018521.5E-37332592IPR002913START domain
SuperFamilySSF559616.78E-21547592No hitNo description
SuperFamilySSF559615.49E-17612814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MSFGVGDHFD DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGRNSG GGGKMVTAAH  60
GGVGGGGGGR AKARDALEVE NEMSRSGSDH LDVVSCGDAG GGGGDDDDDE DAEHGNPPKR  120
KKRYHRHTPQ QIQELEAMFK ECPHPDEKQR AELSKRLGLE PRQVKFWFQN RRTQMKMQLE  180
RHENSLLKQE NDKLRSENLS IREATSNAVC VGCGGPAMLG EVSLEEHHLR VENARLKDEL  240
SRVCALAAKF LGKSISVMAP PQMHQPHPVP GSSLELAVGG IGSMPSATMP ISTITDFAGA  300
MSSSMGTVIT PMKSEAEPSA MAGIDKSLFL ELAMSAMDEL VKMAQMGDPL WIPGASVPSS  360
PAKESLNFEE YLNTFPPCIG VKPEGYVSEA SRESGIVIID DGAALVETLM DERRWSDMFS  420
CMIAKASTTE EISTGVAGSR NGALLLMQAE LQVLSPLVPI REVKFLRFSK QLADGVWAVV  480
DVSADELMRD QGITSASSTA NMNCRRLPSG CVLQDTPNGF VKYLVQISVF SEVYNLSIDQ  540
FLDLPPAFMV TWVEHTEYDE ASVHPLYRPL LRSGLALGAG RWIATLQRQC ECLALLMSSI  600
ALPENDSSAI HPEGKRSMLK LARRMTDNFC AGVSTSSTRE WSKLVGLTGN IGEDVHVMAR  660
KSVDEPGTPP GVVLSAATSV WMPVMPERLF NFLHNKGLRA EWDILSNGGP MQEVTSIAKG  720
QQNGNTVCLL KASPTKDKQN SMLILQETCA DASGSMVVYA PVDIPAMHLV MSGGDSSCVA  780
LLPSGFAILP AGPSIGADHK MGGSLLTVAF QILANSQPSA KLTVESVETV SNLISCTIKK  840
IKTALHCDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.88330.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887620.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119140.0AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637147.10.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLB8AT420.0B8AT42_ORYSI; Uncharacterized protein
STRINGOGLUM04G22100.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]