PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA014540-PA

Common Name

OsI_16995

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 340aa MW: 39171.7 Da PI: 9.1355

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014540-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	5.9e-26	201	250	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl BGIOSGA014540-PA 201 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 250 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.27	185	270	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-21	202	250	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MVPAPFDRFC PGVPATEKMT RKAPGAVRSV HGYKVYGRGG RRRWERWVER EFVLTPASCR 60 EVPAPVAPPR ILPAEWRGRP AYREGQVVAA GAWRCILAFD SAAAPPRTPP PVLSPFLNPR 120 LMCVPSLYND LEKVFRFQNV EKIPKLMQCD SEEKLSSWDA RDKSSDEVHA SESDSDDDLQ 180 SGEEEKPTVQ KQRRANKKHI ASITLVDIAQ YFHLPIREAS RTLKIGVSIL KRKCRQYNIP 240 RWPHRKIKSL DSLIQDLEYV IDDGDDHDDT GDDVQQEKHK QTAEEKQEAI MALTRRKQML 300 ETEKETIQQI PAMDLKVETK QFREDVFKRR YRAKKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	335	RRYRAKKD

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297603179	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-155	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-155	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-155	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	0.0	protein RKD5 isoform X1
TrEMBL	B8AT57	0.0	B8AT57_ORYSI; Uncharacterized protein
TrEMBL	B9FC01	0.0	B9FC01_ORYSJ; Uncharacterized protein
STRING	ORUFI09G04820.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-45	RWP-RK domain-containing protein