PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014615-PA
Common NameOsI_16857
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 148aa    MW: 15319.8 Da    PI: 6.4972
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014615-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.51.5e-19841251859
                       -SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       + +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  BGIOSGA014615-PA  84 AGVPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHTHT 125
                       568**************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.0E-1273126IPR003657WRKY domain
SuperFamilySSF1182905.89E-1583125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-1685125IPR003657WRKY domain
PfamPF031061.2E-1386124IPR003657WRKY domain
PROSITE profilePS5081116.84587124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSPAAANATN AAMPAGARVA ADSSSDAIAG ASEGPGDSEP RGDSSGAIRG DSSGAKMGAG  60
LISSLLDFFA AVSIAKWPWT DRDAGVPRSY YRCTHNNCRV KKRVERLSED CRMVITTYEG  120
RHTHTPCSDD ATTGAAGDHT ASCAFTSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.536411e-104callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329837181e-104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736951e-101AK073695.1 Oryza sativa Japonica Group cDNA clone:J033063J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8ASN11e-103B8ASN1_ORYSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-23WRKY family protein