PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014906-PA
Common NameOsI_16268
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 872aa    MW: 90635.5 Da    PI: 6.0362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014906-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30415472260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  BGIOSGA014906-PA 415 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 472
                       8****************************************.***************85 PP
2WRKY104.94.1e-33628686159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  BGIOSGA014906-PA 628 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 686
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-28403473IPR003657WRKY domain
PROSITE profilePS5081123.571409473IPR003657WRKY domain
SuperFamilySSF1182909.29E-25410473IPR003657WRKY domain
SMARTSM007746.1E-33414472IPR003657WRKY domain
PfamPF031062.1E-23415471IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36613688IPR003657WRKY domain
SuperFamilySSF1182907.32E-29620688IPR003657WRKY domain
PROSITE profilePS5081137.7623688IPR003657WRKY domain
SMARTSM007749.2E-39628687IPR003657WRKY domain
PfamPF031065.4E-25629686IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MTMTTATLDP PPPPLLIAGS LLDDDRDAGS AASSSPRWLP WARGSTVGSP PFRGGEERGG  60
EAATRRKGNS SSPDDDDDCR NDEDDCRNDY DYRDDDVGAT TDGGGDTAAL LPMAMTTATT  120
MAQMPGEMEG DIAMEEWKDS NHRGADYLMT MPMQNFLADA FPPPELLEGE GGFEKHGLSV  180
AVGSPPPTPP PPEDGCSPLP LTPQFGQKFG SGGGSLADRR ARGGFSNVAR ISVPYNQPAA  240
DVSSAGAPSP YVTIPPGLSP TTLLESPVFF SNAMGQASPT TGKLHMLGGA NGSNPIRFES  300
PPIEEGSGAF SFKPLNLASS HYAAEEKTKS LPNNQHQSLP ISVKTEATSI QTAQDEAAAN  360
QLMQPQFNGG KRSRAAPDNG GDGEGQPAEG DAKADSSSGA AAVAVVAAAA AAVAEDGYSW  420
RKYGQKQVKH SEYPRSYYKC THASCAVKKK VERSHEGHVT EIIYKGTHNH PKPAASRRPP  480
RDAQADHAPD GGGGSTPVGA GQAGAEWHNG GVVGGEGLVD ATSSPSVPGE LCESTASMQV  540
HEGAAAAQLG ESPEGVDVTS AVSDEVDRDD KATHVLPLAA AAADGESDEL ERKRRKLDSC  600
ATMDMSTASR AVREPRVVIQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCL  660
VRKHVERASH DLKSVITTYE GKHNHEVPAA RNSGHPAGSA SPGGGAGSSS QPHGVGVGGR  720
RPEVPSVQES LMRLGGGCGA APFPPHFGLH LPPPPPRDPL APMSNFPYSL GHAPSPALRG  780
LPPPPPPPPS ASALAVAGLG GVVEGLKYPM LAPPSVHSLL RHRQGGGMEA VVVPKAEVKQ  840
EAMRPAAAVA GAGRGAAVYQ QAMSRVSLGN QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36397689278Probable WRKY transcription factor 4
2lex_A7e-36397689278Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335191730.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLB8AV640.0B8AV64_ORYSI; Uncharacterized protein
STRINGOS04T0471700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-100WRKY DNA-binding protein 2