PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015018-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 808aa    MW: 90925 Da    PI: 7.3638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015018-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52101391129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yLkkkv  +k++l evi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk
  BGIOSGA015018-PA  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDK 101
                       69****************************.99**************963433332566********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  BGIOSGA015018-PA 102 CIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
                       ***9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-605161IPR003441NAC domain
PROSITE profilePS5100558.0910161IPR003441NAC domain
PfamPF023657.2E-2711138IPR003441NAC domain
PfamPF085832.0E-13315381IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3DG3DSA:3.20.20.704.5E-126431800IPR013785Aldolase-type TIM barrel
CDDcd029331.45E-165437778No hitNo description
SuperFamilySSF513957.89E-108437797No hitNo description
PfamPF007248.2E-77438774IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSE DGWVVCRVFK KKCFFKIGGG GGGEGSGGSQ  180
GGDVGGGHLA VSPPLGGGHA MAAASHYMHP HHQYHHHHHH AAAASPFYYT QMPPPPAAAP  240
PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG LPAVDHHHQH PGLDVGXXXX XXXXXXXXXX  300
XXXXYSSSHS TSLEMHPPLT LHRHPMCAEI IEAFQKCHVD HPVKKFFGEC TDLKIKLDQC  360
FRQEKALKRK ANFEESRSSK NQLLAYKKEM AEPRPRNHNP IYRNKDNYVI CPFKFQVNQD  420
TRTSRGAGER EKMDPVPLFN PCEMGRFTFS HRIVLAPLTR ARSYGNLPQS HAILYYSQRA  480
TKGGLLISEA TGVSSDAPCT NTPGIWTKEQ VEAWKPVVDA VHAKGGIFFC QIWHVGRASD  540
LEQEPISSTD KPVEKNEDMD FPVPRRLAVE EIPDVINHFR IAARNAIDAG FDGVEVHGAH  600
GFLLEQFMKD GVNDRADEYG GSLQNRCRFA LEVIDAVSTE VGPDRVGFRI SPYISYYGCH  660
DSDPDALGVY MARELDRRGV LYCSAVEPEM VAATTVVDCE TTTTTMSRRM MIPHRLHGMR  720
EAFRRGMFMV GGGYDRDAGN MAVASGYADM VVFGRLFLAN PDLPRRFQLD APLNKYDRAT  780
FYTHDPVVGY TDYPFLDDDR EAMSDHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-157431797536912-oxophytodienoate reductase (OPR1)
2q3r_A1e-157431797536912-oxophytodienoate reductase 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.524560.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329772360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0672180.0AK067218.1 Oryza sativa Japonica Group cDNA clone:J013098J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H1C30.0A0A0E0H1C3_ORYNI; Uncharacterized protein
STRINGONIVA04G12040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.19e-77NAC domain containing protein 70