PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015023-PA
Common NameOsI_16034
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 21090.6 Da    PI: 8.678
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015023-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13e-151038230
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHH CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvL 30
                      rien   rqvtf+kRr g+lKKA+ELSvL
  BGIOSGA015023-PA 10 RIENPVHRQVTFCKRRMGLLKKAKELSVL 38
                      8***************************9 PP
2K-box592e-20641501499
             K-box  14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++l+ ++ie l++ke  l+ +n  L++++ 
  BGIOSGA015023-PA  64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQERII 150
                       45579**********************868****************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.84E-15140IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-13150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.016138IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-15323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-121038IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-152338IPR002100Transcription factor, MADS-box
PfamPF014868.2E-2459149IPR002487Transcription factor, K-box
PROSITE profilePS5129712.84764156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE  60
QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK  120
MQLMSREIEM LKNKEGILKA ANDILQERII EQTSILDVRG NMMIPQVPFQ LTTESNYYF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194477.18e-95MADS-box transcription factor 26-like
RefseqXP_020194478.18e-95MADS-box transcription factor 26-like
SwissprotA2YQK95e-54MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G85e-54MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA2XTV31e-128A2XTV3_ORYSI; Uncharacterized protein
STRINGOBART04G13770.11e-123(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-39AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]