PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015047-PA
Common NameOsI_15998
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 316aa    MW: 35303.1 Da    PI: 9.9205
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015047-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.31e-06285308126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y+ e Cr++++   C++ ++C+FaH+
  BGIOSGA015047-PA 285 YGVEVCRDYLK-NMCNR-ESCRFAHP 308
                       899********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.183105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.037105132IPR000571Zinc finger, CCCH-type
PfamPF146080.089111131No hitNo description
PROSITE profilePS5010311.836140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.21140166IPR000571Zinc finger, CCCH-type
PfamPF146083.2152165No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-6181209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807183211IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4183210IPR000571Zinc finger, CCCH-type
SMARTSM003560.73214238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291218239IPR000571Zinc finger, CCCH-type
PfamPF146081.9219236No hitNo description
Gene3DG3DSA:4.10.1000.105.2E-4283307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338284310IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4284309IPR000571Zinc finger, CCCH-type
PfamPF146080.011290308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASAETPNPD AEIPNTDAAA AVDPAAAAPA AAATDPAAAG SPSPPLPPRK RRLSPTPSPT  60
RRSSRSRSRS RSPRRGRSRS RSRSRSRGRS ASPRYPDGKR RRHNDLNVEV CRDFLRDRCA  120
RADIECKYAH PHPTVAVDRD SKVTACADSL RNNCFRGRTC RYYHPPPHIQ ESLLRSIGVE  180
DPKVKMQVCR DFTRGRCSRS ANECRFLHHS PLEDCAIVCQ DFLRGRCDRK SCRYSHVMAH  240
PMPPPMRDIP MQYPDMVYMP PPAPLGVPMM MPPPSAPAAF SGNNYGVEVC RDYLKNMCNR  300
ESCRFAHPDL NNEATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A1e-141061731479Muscleblind-like protein 1
5u9b_A1e-141061731479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17888RSRSRSRSRGR
28088RSRSRSRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.510940.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329706520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636416.11e-163zinc finger CCCH domain-containing protein 28 isoform X1
RefseqXP_015636417.11e-163zinc finger CCCH domain-containing protein 28 isoform X1
RefseqXP_025880587.11e-163zinc finger CCCH domain-containing protein 28 isoform X1
SwissprotQ0JD071e-164C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLB8AU250.0B8AU25_ORYSI; Uncharacterized protein
STRINGOS04T0438700-011e-162(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]