PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015067-PA
Common NameOsI_15967
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 174aa    MW: 17816.7 Da    PI: 5.5763
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015067-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.74.3e-162855532
       ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpse 32
                      +YkeC++NhAa++Gg+a+DGCgE+mp++
  BGIOSGA015067-PA 28 KYKECMRNHAAAMGGQAFDGCGEYMPAS 55
                      7*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-102856IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.7E-122855IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.1062984IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015652.1E-2459111IPR006455Homeodomain, ZF-HD class
SuperFamilySSF466892.87E-1259112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2260113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MMDHLSLVPY EGGSAGGGGG GGGGGGGKYK ECMRNHAAAM GGQAFDGCGE YMPASPRLAQ  60
FTPEQKERMR EFAEKQGWRI NRNDDGALDR FCVEIGVKRH VLKVWMHNHK NQLASSPTSA  120
AAAAAGVMNP GAGIGLGTGL GTGISGDGDG DDDDTDDSPP RAAVSSPSPS PISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-19591112274ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.612270.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154584830.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551530.0CR855153.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete sequence.
GenBankCR8551880.0CR855188.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0102D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653420.22e-57PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ7X7N38e-39ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLB8AU081e-123B8AU08_ORYSI; Uncharacterized protein
STRINGLPERR04G09930.11e-57(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-19homeobox protein 22