PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015085-PA
Common NameOsI_15943
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 165aa    MW: 16768.1 Da    PI: 10.9078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015085-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS36.75.8e-1291156314374
              GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                       +W++++e aG+  v+ls+++++qaklll++ +   + g+rv e +g +   l W+d +L +++ Wr
  BGIOSGA015085-PA  91 NWKAAMEGAGLDGVKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATLWR 156
                       7***************************9977422455***9998877668**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-991156IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNLTLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA  60
EEFDHENGMA ATSSDGGGGG GGGDHAAASW NWKAAMEGAG LDGVKLSSRT VSQAKLLLKM  120
KSGCGGGGFR VVEGDGGMAM SLAWRDMALA TATLWRRRRR RRRCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162RRRRRRRR
2156162RRRRRRR
3157164RRRRRRCR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976027551e-136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634839.11e-53protein MONOCULM 1
TrEMBLA2XTL11e-107A2XTL1_ORYSI; Uncharacterized protein
STRINGOGLUM04G12700.14e-42(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038