PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015096-PA
Common NameOsI_15917
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 230aa    MW: 23160.2 Da    PI: 6.528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015096-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79e-1163971855
               AP2 18 eIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      eIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  BGIOSGA015096-PA 63 EIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 97
                      79996.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.4938105IPR001471AP2/ERF domain
SMARTSM003804.1E-1349111IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1363106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2063106IPR001471AP2/ERF domain
PfamPF008471.1E-56997IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALSEPDLAA ETEAIVSALT HVVAYGRRRP AAERGDRRVR GDKDSAVARG RRAAGGGAGA  60
EEEIRDPHRA ARVWLGTFAT AEDAARAYDA AALRFRGGRA RLNFPEDAAA ADERRATDAA  120
AAAAAASSAP AALLESQPGD VADCLDYSRI LAGAPERPTS STVPDGFFGG GGNGRFLHSW  180
SIGTSPSPSG SGSGGAGGGG GGGGGGAPVR PLFHGGNGWE QRGDSAYNGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066320.0AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.12e-68dehydration-responsive element-binding protein 1C-like
TrEMBLA2XTI51e-155A2XTI5_ORYSI; Uncharacterized protein
STRINGOS04T0429050-007e-68(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022