PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA015115-PA

Common Name

OsI_15880

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 987aa MW: 109067 Da PI: 8.8199

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA015115-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	221	309	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ BGIOSGA015115-PA 221 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 309 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-20	221	309	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-14	443	514	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.546	690	726	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-6	701	724	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-5	701	728	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP ARNASAAPPS 60 GSPDTAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI 120 PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA 180 ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN 240 KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF 300 QPRHNHPLFA TSCMPNPLQP NVVHWTTLPD AVTPPDLLMD GGEVGGQNST EENSTASAGE 360 GRRQPLRTRR QWEMKYGEAG ALLNYFQDQS LANPSFYHAV QLDVEDKVAN VFWADPRMIT 420 DYSQFGDVIA FDVVSRNSIS LRHFASFVGC NNFGEPIVFG LALMYDETAE SFQWLFETFL 480 HAMSGRAPKT FFSHQDAVVA KAVSIVMPDT THLKSDSDFM KEFKACINLY EEETEFLTSW 540 DAMINKHNLH DNVWLKKVFE EKEKWARPYM RGVFSAGMKG TRLNDRFQSD VRDHLRPEVN 600 ILLLLRHLET VINDRRRKEL EVEYSSRLKL LYFKIKAPIL TQAFEAYTNT IFPLFQEEYE 660 EFQSAYIVNR DESGPCREYV VSVVEKEKRY TVYGNPTEQT VSCSCKKFER NGFLCSHALK 720 ILDAMDIKYL PDRYIMKRWT KYARTLMSGD VQGQAIQADK LSESSSRYQY MCPKYVRLVA 780 RASECEESYR VLDQCWVDLS NKVEEILQKQ TCVDATLTQT DVQNLKVSLP SITNGTQAEN 840 IMDKSSGTTA KESKKKGQKN KIQSRNCIEK GLRKKQKVHS EQPSEYALLG GSQSGNMFQA 900 FEGPPNMSPL GTQTPTYKTY RGIDLSSPMG PISYDEMPSG LDPTFTTHLG FATYHTSQVS 960 SSSPHNQQPD ENFCTKTSEL NNLHSSL

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP ARNASAAPPS  60
GSPDTAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI  120
PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA  180
ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN  240
KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF  300
QPRHNHPLFA TSCMPNPLQP NVVHWTTLPD AVTPPDLLMD GGEVGGQNST EENSTASAGE  360
GRRQPLRTRR QWEMKYGEAG ALLNYFQDQS LANPSFYHAV QLDVEDKVAN VFWADPRMIT  420
DYSQFGDVIA FDVVSRNSIS LRHFASFVGC NNFGEPIVFG LALMYDETAE SFQWLFETFL  480
HAMSGRAPKT FFSHQDAVVA KAVSIVMPDT THLKSDSDFM KEFKACINLY EEETEFLTSW  540
DAMINKHNLH DNVWLKKVFE EKEKWARPYM RGVFSAGMKG TRLNDRFQSD VRDHLRPEVN  600
ILLLLRHLET VINDRRRKEL EVEYSSRLKL LYFKIKAPIL TQAFEAYTNT IFPLFQEEYE  660
EFQSAYIVNR DESGPCREYV VSVVEKEKRY TVYGNPTEQT VSCSCKKFER NGFLCSHALK  720
ILDAMDIKYL PDRYIMKRWT KYARTLMSGD VQGQAIQADK LSESSSRYQY MCPKYVRLVA  780
RASECEESYR VLDQCWVDLS NKVEEILQKQ TCVDATLTQT DVQNLKVSLP SITNGTQAEN  840
IMDKSSGTTA KESKKKGQKN KIQSRNCIEK GLRKKQKVHS EQPSEYALLG GSQSGNMFQA  900
FEGPPNMSPL GTQTPTYKTY RGIDLSSPMG PISYDEMPSG LDPTFTTHLG FATYHTSQVS  960
SSSPHNQQPD ENFCTKTSEL NNLHSSL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.22598	0.0	callus\| flower\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32983021	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855155	0.0	CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	0.0	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A2XTE7	0.0	A2XTE7_ORYSI; Uncharacterized protein
STRING	OS04T0421700-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-82	FAR1-related sequence 5