PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015145-PA
Common NameOsI_15785
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family S1Fa-like
Protein Properties Length: 131aa    MW: 15062 Da    PI: 10.5735
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015145-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA129.87.3e-4164131470
              S1FA   4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                        ++e+ kGlnPG ivllvv++ll++f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe
  BGIOSGA015145-PA  64 IIEEVnKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 131
                       456668*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF049491.9E-29160IPR007033RAB6-interacting golgin
ProDomPD0190132.0E-963131No hitNo description
PfamPF046891.3E-3867131IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MADPTRKEVE VIRKRIDVVN RQLKPLGKTC VKKEKEYKEI LEAYNEKNKE KALLVNRLIE  60
NNMIIEEVNK GLNPGTIVLL VVATLLILFF VGNYALYMYA QKTLPPRKKK PVSKKKLKRE  120
KLKQGVSAPG E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.84011e-120callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329823141e-120
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0722911e-118AK072291.1 Oryza sativa Japonica Group cDNA clone:J023018N16, full insert sequence.
GenBankAP0149601e-118AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-118CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633416.12e-43DNA-binding protein S1FA1
SwissprotP425532e-44S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA2XT486e-86A2XT48_ORYSI; Uncharacterized protein
STRINGORUFI04G12850.14e-43(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563