PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015321-PA
Common NameOsI_15410
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 201aa    MW: 21605.2 Da    PI: 11.587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015321-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10107151347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W++eE+ l++ +  ++G+g+ ++I+r +   Rt+ q+ s+ qky
  BGIOSGA015321-PA 107 PWSEEEHRLFLLGLDKFGKGDLHSISRNFVISRTPTQVASHAQKY 151
                       7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.63100156IPR017930Myb domain
SuperFamilySSF466891.79E-15102157IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-15104154IPR006447Myb domain, plants
SMARTSM007177.7E-8104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-7105150IPR009057Homeodomain-like
PfamPF002494.1E-8107151IPR001005SANT/Myb domain
CDDcd001678.70E-8107152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAEGADDGDG APGRSSPAVR VRGGARRPSE RGEELAGRPC AERSSHAVLA RGRSWSSPVI  60
GSSGGAVGDC PRLTSIPTRG GRADVVGRYV VGKICSKSEQ ERRKGIPWSE EEHRLFLLGL  120
DKFGKGDLHS ISRNFVISRT PTQVASHAQK YFIRLNSMNR DRRRSSIHDI TSVTAGDVAA  180
QQGPITGQAK AALRRRSGHR A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.153381e-124leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO248503021e-124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6067291e-148AL606729.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence.
GenBankAP0149601e-148AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552271e-148CR855227.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159H11-OSIGBa0137A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688858.12e-61PREDICTED: uncharacterized protein LOC102709047
TrEMBLA2XS151e-141A2XS15_ORYSI; Uncharacterized protein
STRINGONIVA04G06580.11e-116(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-39MYB family protein