PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015389-PA
Common NameOsI_15289
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 285aa    MW: 30371.8 Da    PI: 5.6375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015389-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1296140554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +L
  BGIOSGA015389-PA  96 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKL 140
                       6789*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19391140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.40E-1395145No hitNo description
SuperFamilySSF474593.01E-1595160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1096140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1397146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1398159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYG PAAAPATPAM VEKEYDESLS  60
ELYAYTSQSR YADSSSPDVV NLCSTAVASA AASSKNIAME RDRRKRLNEK LFALRAVVPK  120
ITKMDKASIV RDAIAHIEKL HEEERQLLDE ISVLQSAAAV AATAVEDVDD SGVTMPSMKK  180
LRSTPPLDGG GGALRVASSP PLQILELQVS KVGEKTVAVS IRCAKTRGAM AKVCHAVESL  240
HLKVVSASVA AVDGTIVHTM FVETEQMSGA QEMKQRIQSS LLSAP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.988900.0callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-159CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.10.0transcription factor bHLH35
TrEMBLB8AS630.0B8AS63_ORYSI; Uncharacterized protein
STRINGORUFI04G07840.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-41bHLH family protein