PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015399-PA
Common NameOsI_15272
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 465aa    MW: 53537.6 Da    PI: 6.6149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015399-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.22.6e-1330105189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                       kfYneYA+  GFs+r++k k+              ++  k+ e+++   ++r++ra t +gCka+l+++++  +g w v+ +e  H+H l
  BGIOSGA015399-PA  30 KFYNEYARCKGFSIRRDKVKRF-----------SGYRTLKNFERTN---RKREPRALTCCGCKAMLEIELNGeTGMWFVSGFEARHSHRL 105
                       6**************9986665...........4455555555543...4788******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-1130105IPR004330FAR1 DNA binding domain
SuperFamilySSF540012.55E-16326459No hitNo description
Gene3DG3DSA:3.30.310.1302.8E-8374420No hitNo description
PfamPF029029.0E-8376455IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDEDEVSLEE MEEYNLVASK LFRSEEDGYK FYNEYARCKG FSIRRDKVKR FSGYRTLKNF  60
ERTNRKREPR ALTCCGCKAM LEIELNGETG MWFVSGFEAR HSHRLPNPDL VAFLRSHREV  120
NDAQKAEAVE LGVGGLRTCQ IMYVMEKNHG GYDKIVDDIT LAIECSKSSQ IQKDKNVQDI  180
TRDSEESKQS ESCIPTDKDV QDITSDSKKS KQSESCIHTD KNVQDIPSDS DIKTSEKRVD  240
STTHATSHKD RPETESLTRK LIMLIEEQGK EMKEMKQNQQ SMHNQIQSLT NIIAAFKEEK  300
TIPTSKNSKP NVCKSFDKET HIIKKKFKCT AEDEETIKSI MSAPESQLVV HIDDVSISQK  360
TMQILTNPVT ESSTSYLDDH IFLPMNIKEK HRYLAVIHAK RRIIQVLDSM ANSSTQRKEL  420
RKVLLEPEEK HIATQWPDHH ITSWEVTVIQ NLPLQGDLYV MQPLQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.59621e-129callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329802071e-129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-163CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8AS070.0B8AS07_ORYSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5