PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA015793-PA

Common Name

OsI_14644

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 685aa MW: 75685.6 Da PI: 6.5577

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA015793-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	104	116	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyGd+C+F+H+ BGIOSGA015793-PA 104 SCKYGDSCRFSHD 116 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.53	87	118	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.3E-74	329	572	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	5.56E-65	333	644	No hit	No description
CDD	cd02801	4.58E-95	333	568	No hit	No description
Pfam	PF01207	3.8E-54	336	570	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	417	435	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002943	Biological Process	tRNA dihydrouridine synthesis
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG 60 KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY 120 LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL 180 WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE 240 CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS 300 NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC 360 GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSVDFIDIN 420 MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD 480 IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG 540 CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET 600 TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSS ADWIRISEML 660 LGKVPEGFTF TPKHKSNAYD RAENG

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG  60
KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY  120
LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL  180
WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE  240
CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS  300
NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSVDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD  480
IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG  540
CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET  600
TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSS ADWIRISEML  660
LGKVPEGFTF TPKHKSNAYD RAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	2e-27	330	564	27	257	tRNA-dihydrouridine synthase B
6ei9_B	2e-27	330	564	27	257	tRNA-dihydrouridine synthase B
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.7618	0.0	callus\| flower\| leaf\| panicle\| root\| stem\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37988362	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111699	0.0	AK111699.1 Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635918.1	0.0	LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q7XT07	0.0	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A2XPT3	0.0	A2XPT3_ORYSI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	ORGLA04G0007500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10322	25	27

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]