PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015954-PA
Common NameOsI_14979
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 109aa    MW: 10830 Da    PI: 3.9921
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015954-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP49.91.2e-154833089
               TCP 30 arfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg................k 89
                      a +F+L++e G+ +d++ti+ Ll+qa+p+i+++tgt+ +++++       +sss++a++  +g                +
  BGIOSGA015954-PA  4 AGVFQLTREFGHSTDGETIDCLLRQAEPSIIAATGTGVTPEEAPpapvAIGSSSVAAAAAAAGhggafvhvpyytpllmQ 83
                      679*********************************66666333332222222222221111133445555554444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.349136IPR017887Transcription factor TCP subgroup
PfamPF036345.1E-10449IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MVPAGVFQLT REFGHSTDGE TIDCLLRQAE PSIIAATGTG VTPEEAPPAP VAIGSSSVAA  60
AAAAAGHGGA FVHVPYYTPL LMQPPNADEP PMASAASASG TTAADENNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538071e-161callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853891e-161
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-163CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581062.11e-42transcription factor PCF1
SwissprotO238753e-42PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA2XQQ94e-71A2XQQ9_ORYSI; Uncharacterized protein
STRINGOPUNC04G03490.11e-46(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-15TCP family protein