PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015991-PA
Common NameOsI_15056
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 177aa    MW: 19121.5 Da    PI: 8.6737
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015991-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.11.5e-07981231540
               TCR  15 kkYCeCfaagkkCseeCkCedCkNke 40 
                         YC Cf+a  +Cs++C+C++CkN+e
  BGIOSGA015991-PA  98 ESYCLCFSAYGYCSQNCRCTNCKNRE 123
                       58**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163413.04589177IPR005172CRC domain
PfamPF036386.9E-598123IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAAVNHGTDA SRAGPPYASA PRGNQVAPAS GHDSGDGSTF ASGGAPPHPH PPLVPPSPRL  60
LSPAASKQGS TAGVALKRDE KEKGGICHFK KRARGKQESY CLCFSAYGYC SQNCRCTNCK  120
NREYYEDFVE ERVDMIKMKN PRAFDPKIVR VQDASEIEPQ SSNAVLMPEV QVPRTFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-145CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8AR641e-128B8AR64_ORYSI; Uncharacterized protein
STRINGOBART04G02690.11e-71(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-11Tesmin/TSO1-like CXC domain-containing protein