PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016160-PA
Common NameOsI_15435
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 434aa    MW: 47462.6 Da    PI: 9.7287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016160-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-1321123399
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                       kvl+ps+ +k   ++++ + a++            gg +++    ++ ++ g++W+v++    ++ +g+ +l++GW eF+ a+gL  g fvv 
  BGIOSGA016160-PA  21 KVLMPSSFHK---MRISDELAADLlgergdgggggGGAPRR--AARVVSPVGKVWDVEVGRddDGDGGGAFLGRGWAEFAAAHGLGMGWFVVV 108
                       5555555554...4577777777777778888775455444..69999***********6655666666************************ PP

                       EE-SSSEE..EEEEE-S CS
                B3  83 kldgrsefelvvkvfrk 99 
                       +++g  ++ l+vk+f++
  BGIOSGA016160-PA 109 RHEG--GGVLTVKLFDT 123
                       *755..7778***9997 PP
2B3331.1e-101642421596
                       -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +++p kf++++  + ++ +  + ++ ++ g+ W+++l  +k   ++++++GW +F + +g+  gD+v+++++g+  f  ++kv
  BGIOSGA016160-PA 164 KMRIPAKFVQHYiaE-EHLNIHMASILSPLGKFWRIEL--EKDELGMFFKGGWLQFLSFHGISPGDVVLLRHEGNLVF--KIKV 242
                       599******888742.333344788999**********..****9**************************8876666..5555 PP
3B371.97.9e-23326420186
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                       ++k+++++++l++g+++lp  f++++g+++e+++tl++++++g       rsWev ++++k++ +   +l +GWk+F++angL +gD+++F++
  BGIOSGA016160-PA 326 WIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRGrssssssRSWEVACSVNKNGYGccNLLPSGWKRFCQANGLLVGDVCTFSV 418
                       7899*****************************************************99666666779***********************96 PP

                       -S CS
                B3  85 dg 86 
                       ++
  BGIOSGA016160-PA 419 VE 420
                       43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-1318126IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-619124IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-1420126IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-921123IPR003340B3 DNA binding domain
CDDcd100171.88E-821122No hitNo description
PROSITE profilePS508639.99667124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16147248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18148248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.18150246IPR003340B3 DNA binding domain
CDDcd100175.62E-13151243No hitNo description
SMARTSM010192.0E-9153246IPR003340B3 DNA binding domain
PfamPF023621.1E-8164240IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-15321430IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16322430IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-21326430IPR003340B3 DNA binding domain
PROSITE profilePS5086311.575326432IPR003340B3 DNA binding domain
SMARTSM010192.0E-6327432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA  60
RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL  120
FDTTCCLWDF GARPAVVTTR SGRARDASNK PQFLRVLLPG FMEKMRIPAK FVQHYIAEEH  180
LNIHMASILS PLGKFWRIEL EKDELGMFFK GGWLQFLSFH GISPGDVVLL RHEGNLVFKI  240
KVFGINGCKK DLKTKDDITI QQSARNQHET PSFSTRKCNK NSRFGEDCKN QLQEIPCSIK  300
GSRKKGRETK RPKKSKSIYE IGPPSWIKKE ISNYMLENGN ISLPGIFCKS IGLVEETTIT  360
LMINSSRGRS SSSSSRSWEV ACSVNKNGYG CCNLLPSGWK RFCQANGLLV GDVCTFSVVE  420
ATLWHVAIDR VERS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303312KKGRETKRPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-175CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880727.10.0LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS740.0Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLB8ASH10.0B8ASH1_ORYSI; Uncharacterized protein
STRINGORUFI04G09430.10.0(Oryza rufipogon)
STRINGONIVA04G06710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-15B3 family protein