PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016270-PA
Common NameOsI_15654
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8246.64 Da    PI: 9.7172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016270-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54e-141153244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      rie+  +r + f kR++g+ KK eEL vLCda v  +++s +g
  BGIOSGA016270-PA 11 RIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53
                      8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-11264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.941253IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-16354IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-12424IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-122439IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-123960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKVEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATHLEL LFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149601e-106AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-106CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880634.11e-40MADS-box transcription factor 33-like isoform X3
TrEMBLA2XSR91e-44A2XSR9_ORYSI; Uncharacterized protein
TrEMBLA3AT821e-44A3AT82_ORYSJ; Uncharacterized protein
STRINGONIVA04G08300.19e-45(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.15e-14AGAMOUS-like 79