PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016274-PA
Common NameOsI_15659
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 915aa    MW: 102724 Da    PI: 6.0964
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016274-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.22.1e-55301462117
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np 
  BGIOSGA016274-PA  30 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPC 122
                       67779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylev 117
                       fqrrc+w+Le ++e+ivlv+y+ev
  BGIOSGA016274-PA 123 FQRRCFWMLEPAYEHIVLVQYREV 146
                       **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.34926152IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7029147IPR005559CG-1 DNA-binding domain
PfamPF038596.6E-4732145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.26E-5419466IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.209.7E-16558654IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.769560652IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.54E-15560654IPR020683Ankyrin repeat-containing domain
CDDcd002041.34E-9565652No hitNo description
PfamPF127963.6E-7576654IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-4593622IPR002110Ankyrin repeat
PROSITE profilePS5008810.927593625IPR002110Ankyrin repeat
SMARTSM002481800632661IPR002110Ankyrin repeat
SMARTSM0001527713735IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529714743IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.27E-6769819IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95772801IPR000048IQ motif, EF-hand binding site
SMARTSM0001519773793IPR000048IQ motif, EF-hand binding site
PfamPF006120.02774792IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6794816IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64795823IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-5796816IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MSLSKWSSLV VSLVDSWLDR PSCFDINVLH KEARSRWLKP SEVYYILQNH ERFPITPEPP  60
KKPPSGSLFL YNRRVNRYFR RDGHAWRRKK DGRTVGEAHE RLKVGNVDAL SCYYAHGEQN  120
PCFQRRCFWM LEPAYEHIVL VQYREVGAAE GRYNSASLLN GPTDSLSVLS YPNATYGNQY  180
LGSTSGVSDG SESLHSNLSS VTEVSSYSAN KDNGILQSIQ ELSQSTIMGA PALGQSSLEQ  240
SIEVRWVDNS NSTNKSGLNR ALKQIVEQLS LGDDEDDDYI HQAQPFDFIT NIEAPDRQRD  300
ASRNVSEYQP PGSLYNSDMQ QISAAKRFLL ETEDSIDSPS YNYVPREEGN NGTNTLSVHD  360
YSLQSSLNPD WKKTAPLTLQ SNLYGSEIPS LLLDHGQFES LSSGENTRLI LGQNPRFSIR  420
EVSPEWTYCY EITKVIITGD FLCDPSSSCW AVMFGDSEVP AEIVQAAKSC YFLAKFVRML  480
LCENGSHANS NGDPQSVQCP KLKMNDEHWQ RLIDELKGGC ENPLNVSDWI MEELLKSKLQ  540
QWLSVKLQGY DGIACSLSKH EQGIIHLISA LGYEWALSSI LSADVGINFR DTNGWTALHW  600
AAYFGREKMV AALLAAGASA PAVTDPTAQD PVGKTAAFLA SERGHLGLAA YLSEVSLTSY  660
LASLTIQESD TSKGSAAAEA ERAVESISQR NAQLHGGTED ELSLKDSLAA VRNAAQAAAR  720
IQNAFRAFSF RKRQQKTARL KDEYGMTQED IDELAAASRS YYQSLLPNGQ FYDKAAVSIQ  780
KKFKGWKGRR HFLNMRRNAV KIQAHVRGHQ VRKKYKTFVS TVSVLEKVIL RWRRKGHGLR  840
GFRAEQTAMA EAEEDDEDDD DDDFNDDEAV KVFRRQKVDE SVKEAMSRVL SMVDSPEARM  900
QYRRMLEEFR QATAE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.117020.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154580590.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG21e-137CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLB8AT750.0B8AT75_ORYSI; Uncharacterized protein
STRINGORUFI04G11670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-122Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]