PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016307-PA

Common Name

OsI_15708

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 205aa MW: 23999.1 Da PI: 9.3251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016307-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.5	3.8e-12	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHelap 91 +fY++YA + GF+++ks+++k r+ +C++egk+ ++ ++ +++++r+++++ ka +k++ ++ +v+++ l+HnH+l+p BGIOSGA016307-PA 11 NFYQRYACHGGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQQRRPSKKMRSKAYVKLRHNYdggALSSVVYDVAeLQHNHPLTP 97 6**************99887.......7899******9999.99999**************9543234566665449***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-7	11	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAFPTYDDTY NFYQRYACHG GFDIKKSRTH KAFREVCCTR EGKHVSKVTD GDRQQRRPSK 60 KMRSKAYVKL RHNYDGGALS SVVYDVAELQ HNHPLTPSTS VVKHMRAHKN REDTVMQFVD 120 TMQTQMWIVI RTFPSDRCRK VANVRKENAN DINKLLEFFN ECTLQNPKFY WDAQLDENGV 180 IKNLFWSHAS SQVEFADFGD AVYNI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	1e-163	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882211.1	1e-73	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8ATI2	1e-155	B8ATI2_ORYSI; Uncharacterized protein
STRING	ORGLA03G0393200.1	2e-69	(Oryza glaberrima)
STRING	ORGLA10G0024000.1	2e-69	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-12	FAR1 family protein